| A brotherly examination re-examined (1646) by Thomas Coleman | | |
| A defence of infant-baptism: in answer to two treatises, and an appendix to them concerning it (1646) by Stephen Marshall | | |
| A funerall sermon preached by Dr Gouge of Black-Friers London, in Cheswicke Church, August 24. 1646 (1646) by William Gouge | | |
| A just and necessary apology against an unjust invective (1646) by Edmund Calamy | | |
| A mistake, or misconstruction, removed (1646) by Thomas Gataker | | |
| A model of true spiritual thankfulnesse (1646) by Thomas Case | | |
| A modell of the government of the Church under the Gospel, by presbyters, proved out of the holy Scriptures (1646) by George Walker | | |
| A plot for the good of posterity (1646) by Francis Cheynell | | |
| A sermon preached before the Honorable House of Commons assembled in Parliament, at their late solemn fast, August 26. 1646. (1646) by Jeremiah Burroughs | | |
| A shadow of the victory of Christ (1646) by John Maynard | | |
| A speech by the Marquesse of Argile to the Honourable Lords and Commons in Parliament. 25. June 1646 (1646) by Archibald Campbell | | |
| A treatise of Mr. Cottons, clearing certaine doubts concerning predestination (1646) by William Twisse | | |
| A two-edged sword out of the mouth of babes, to execute vengeance upon the enemy and avenger (1646) by Stephen Marshall | | |
| A vievv of some exceptions (1646) by Henry Hammond | | |
| A vindication of Mr Burroughes (1646) by Jeremiah Burroughs | | |
| Aarons rod blossoming. Or, The divine ordinance of church-government vindicated (1646) by George Gillespie | | |
| An after-reckoning with Mr Saltmarsh (1646) by John Ley | | |
| An historicall vindication of the government of the Church of Scotland (1646) by Robert Baillie | | |
| An ordinance of the Lords and Commons assembled in Parliament: For the ordination of ministers by the classicall presbyters (1646) by Parliament | | |
| De diphthongis, sive bivocalibus (1646) by Thomas Gataker | | |
| Deliverance-obstruction: or, The set-backs of reformation. (1646) by Thomas Case | | |
| Englands face in Israels glasse: or, The sinnes mercies judgements of both nations (1646) by Thomas Westfield | | |
| Englands plus ultra, both of hoped mercies, and of required duties (1646) by Joseph Caryl | | |
| Hamartolos hamartia: or, The sinfulnes of sin (1646) by Samuel Bolton | | |
| Heaven and earth embracing (1646) by Joseph Caryl | | |
| Higay’on sela The commemoration and exaltation of mercy (1646) by William Strong | | |
| Irenicum: to the lovers of truth and peace (1646) by Jeremiah Burroughs | | |
| Israels call to march out of Babylon unto Jerusalem (1646) by John Dury | | |
| Joseph paralled by the present Parliament, in his sufferings and advancement (1646) by Francis Woodcock | | |
| Joy out-joyed: or, joy in overcoming evil spirits and evil men, overcome by better joy (1646) by Joseph Caryl | | |
| Large additions to the Practicall catechisme (1646) by Henry Hammond | | |
| Lex talionis: or, God paying every man in his own coyn (1646) by Francis Woodcock | | |
| Light for smoke (1646) by John Ley | | |
| Male audis or An answer to Mr. Coleman his Malè dicis (1646) by George Gillespie | | |
| Male dicis maledicis. Or A brief reply to Nihil respondens (1646) by Thomas Coleman | | |
| Mans delinquencie attended by divine justice intermixt with mercy (1646) by William Price | | |
| Memorable dayes and vvorkes of God, in the yeare past. 1645 (1646) by Joseph Caryl | | |
| Miranda, stupenda. Or, The wonderfull and astonishing mercies which the Lord hath wrought for England (1646) by Henry Wilkinson, Jr. | | |
| Of conscience, scandall, vvill-vvorship, and superstition (1646) by Henry Hammond | | |
| Of idolatry (1646) by Henry Hammond | | |
| Of resisting the lavvfull magistrate under colour of religion, and appendant to it, or the word krima, rendred damnation, Rom. 13 (1646) by Henry Hammond | | |
| Publick affections, pressed in a sermon before the Honourable House of Commons Febr. 25. 1645 (1646) by Anthony Burgess | | |
| Queen Esthers resolves: or A princely pattern of heaven-born resolution, for all the lovers of God and their country (1646) by Richard Heyrick | | |
| Religious covenanting directed, and covenant-keeping perswaded (1646) by Simeon Ashe | | |
| Self-deniall: opened and applied in a sermon before the reverend Assembly of Divines (1646) by Edward Reynolds | | |
| Selfe-examination required in every one, for the worthy receiving of the Lords Supper (1646) by Daniel Cawdrey | | |
| Severall speeches, spoken by the right honourable the Earle of Loudoun, Lord high Chancellor of Scotland (1646) by John Campbell | | |
| Severall tracts (1646) by Henry Hammond | | |
| Shadowes without substance, or, Pretended new lights (1646) by Thomas Gataker | | |
| The arraignment of errour: or, A discourse serving as a curb to restrain the wantonnesse of mens spirits in the entertainment of opinions (1646) by Samuel Bolton | | |
