| An answer to the reasons of the dissenting brethren against the proposition concerning ordination, 4/19/1648 (5:340), 134 | | |
| The answer of the assembly of divines to the reasons of the dissenting brethren against the proposition concerning the subordination of congregational, classical, provincial, and national assemblies, 8/19/1646 (5:307), 111 | | |
| Answer to the dissenting brethren’s Remonstrance, submitted to both houses of parliament, 12/19/1645 (5:264-296), 99 | | |
| Petition to both houses of parliament requesting permission to print a response to the dissenting brethren’s Remonstrance, 12/11/1645 (5:263), 98 | | |
| Remonstrance of the dissenting brethren concerning reasons why they did not think fit to bring in their model of government, 10/13/1645 (5:252-256), 92 | | |
| Answer to the reasons of the dissenting brethren against the instance of the church of Ephesus, 10/13/1645 (5:250-251), 91 | | |
| Paper by the dissenting brethren on the reform of local congregationalists, 3/27/1645 (5:186-187), 66 | | |
| Answer of the assembly to the dissent of the congregationalists about excommunication, 2/6/1645 (5:174-175), 60 | | |
| Paper of dissent submitted by the dissenting brethren, 3/27/1645 (5:185), 65 | | |
| Dissent of the congregationalists about excommunication, 2/3/1645 (5:173), 59 | | |
| Answer to the reasons of the dissenting brethren against the third proposition concerning presbyterian government, submitted to both houses of parliament, 12/20/1644 (5:152-153), 52 | | |
| The reasons of the dissenting brethren concerning the power that is in congregations, 12/12/1644 (5:144), 49 | | |
| The arguments of the dissenting brethren against the subordination of synods, submitted to both houses of parliament, 12/12/1644 (5:143), 48 | | |
| Reasons of the dissenting brethren against the proofs from the instance of the church of Ephesus, submitted to both houses of parliament, 12/12/1644 (5:141-142), 47 | | |
| Message to both houses of parliament regarding the congregationalists, 11/19/1644 (5:116-117), 41 | | |
| The reasons of the dissenting brethren against the third proposition concerning presbyterial government, submitted to both houses of parliament, 11/14/1644 (5:111-112), 38 | | |
| Petition of Thomas Goodwin, Philip Nye and others to the House of Commons, 11/12/1644 (5:110), 37 | | |
| Disclaimer to both houses of parliament against the Apologetical Narration, 3/6/1644 (5:49-50), 17 | | |
